sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-V24-V25
X
>1S03-A33-A34
X
>3U5F-678-679
X
>3OHK-A2326-A2327
X
>1ZFV-A3-A4
X
>2BCY-A3-A4
X
>2UUB-A1293-A1294
X
</seq>
<hsp>
0 1:0.977754220573
0 2:0.786189085324
0 3:1.0
0 4:0.50166521328
0 5:0.470009623493
0 6:0.529710257925
1 2:0.506025059116
1 3:0.328863375634
1 4:0.583826462632
1 5:0.621059318999
1 6:0.774727329041
2 3:0.375671828743
2 4:0.543890272225
2 5:0.512748210991
2 6:0.793878747799
3 4:0.601144212389
3 5:0.621119066873
3 6:0.842211788841
4 5:0.161353155792
4 6:0.323742004933
5 6:0.308230416804
</hsp>