sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-5265-5267
X
>1FFK-0367-0369
X
>3CME-0368-0370
X
>2OTJ-0368-0370
X
>3CCV-0368-0370
X
>1YJ9-0368-0370
X
>3CCE-0368-0370
X
>3CPW-0368-0370
X
>1VQ8-0368-0370
X
>1YI2-0368-0370
X
>1YHQ-0368-0370
X
>3CC7-0368-0370
X
</seq>
<hsp>
0 1:0.730634239085
0 2:0.891464232447
0 3:0.999986966851
0 4:0.873914341867
0 5:0.722247050308
0 6:0.794399656239
0 7:0.833915297913
0 8:0.781406763734
0 9:0.747174850032
0 10:0.769552865279
0 11:0.705785931742
1 2:0.634057524851
1 3:0.620213263027
1 4:0.311588224484
1 5:0.424778618101
1 6:0.408432887765
1 7:0.430846514806
1 8:0.339988051734
1 9:0.232099274029
1 10:0.283767060219
1 11:0.398815652705
2 3:0.22217512309
2 4:0.437956031876
2 5:0.509978304035
2 6:0.336128404876
2 7:0.31515379032
2 8:0.368141372181
2 9:0.499249873731
2 10:0.465061008644
2 11:0.466907141114
3 4:0.374921110003
3 5:0.47475090336
3 6:0.328955421384
3 7:0.252608337444
3 8:0.322158249373
3 9:0.47035048736
3 10:0.406172385158
3 11:0.434152693555
4 5:0.374272271563
4 6:0.309822974619
4 7:0.263165909896
4 8:0.209524744385
4 9:0.24821052926
4 10:0.209546135844
4 11:0.317127900821
5 6:0.301251549813
5 7:0.28161345603
5 8:0.345261240517
5 9:0.298552338184
5 10:0.256437006114
5 11:0.185598562573
6 7:0.152537796877
6 8:0.265771126338
6 9:0.218505142774
6 10:0.230943966581
6 11:0.303339365033
7 8:0.202751660967
7 9:0.263342177726
7 10:0.212915000433
7 11:0.281640364374
8 9:0.252871772768
8 10:0.180972667435
8 11:0.266131586066
9 10:0.118982581364
9 11:0.261401184327
10 11:0.187982337951
</hsp>