sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A198-A162
X
>2VQF-A198-A162
X
>2UXC-A198-A162
X
>3R8S-A2774-A2772
X
>1ZBH-F10-F8
X
>3U5D-13046-12904
X
>2VQE-A198-A162
X
>1ET4-A24-A22
X
>3GCA-A22-A20
X
>3HHN-C28-C26
X
>3Q51-A21-A19
X
>3Q50-A22-A20
X
</seq>
<hsp>
0 1:0.279302990663
0 2:0.473937458209
0 3:0.564417668689
0 4:0.623410273301
0 5:0.378729192495
0 6:0.343733622975
0 7:0.414753739297
0 8:0.518468228561
0 9:0.454958342175
0 10:0.645830128166
0 11:0.619208905239
1 2:0.29612406113
1 3:0.427100123797
1 4:0.811876731379
1 5:0.340675961919
1 6:0.197859154532
1 7:0.400697954834
1 8:0.367020596325
1 9:0.441202841345
1 10:0.495824061011
1 11:0.53668329508
2 3:0.419788997989
2 4:0.940756942203
2 5:0.511935358679
2 6:0.211947546547
2 7:0.436460999389
2 8:0.442530543251
2 9:0.522203544074
2 10:0.500329673812
2 11:0.57220198933
3 4:0.999999635436
3 5:0.345953778221
3 6:0.394521561468
3 7:0.415526638789
3 8:0.212961583728
3 9:0.370821154712
3 10:0.415173584557
3 11:0.432474163448
4 5:0.762170397939
4 6:0.767953833102
4 7:0.635121856343
4 8:0.890051389206
4 9:0.718298452879
4 10:0.867191782398
4 11:0.772008830478
5 6:0.356910642763
5 7:0.336684564155
5 8:0.255039140308
5 9:0.21085193029
5 10:0.429868207868
5 11:0.375388350696
6 7:0.295846151285
6 8:0.336655073188
6 9:0.358805181434
6 10:0.393450885688
6 11:0.428825660581
7 8:0.333553797269
7 9:0.279367213549
7 10:0.345948889532
7 11:0.288543988479
8 9:0.28913638062
8 10:0.26729796481
8 11:0.289545663564
9 10:0.38065525999
9 11:0.271285537712
10 11:0.177734974958
</hsp>