sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-12389-1939
X
>3OHZ-A1214-A1216
X
>3KNI-A1220-A1222
X
>3U5D-375-377
X
>3CCQ-0200-0202
X
>3U5H-52390-5945
X
>3DIQ-A25-A27
X
>1VQL-0200-0202
X
>3DIM-A25-A27
X
>3D0U-A22-A24
X
>1Q81-A162-A164
X
</seq>
<hsp>
0 1:0.957742961665
0 2:0.805538253646
0 3:0.967332546146
0 4:0.545221816358
0 5:0.506107444948
0 6:0.31037197981
0 7:0.528114184371
0 8:0.4631755798
0 9:0.45787706865
0 10:0.834287915399
1 2:0.461018540473
1 3:0.454155939853
1 4:0.572040419991
1 5:0.834586824708
1 6:0.780461428742
1 7:0.690163371216
1 8:0.694355672215
1 9:0.999993944805
1 10:0.797581930562
2 3:0.650887562894
2 4:0.376092800978
2 5:0.772812422553
2 6:0.638155127607
2 7:0.513955090813
2 8:0.544950044778
2 9:0.825620946387
2 10:0.86717115171
3 4:0.590106766524
3 5:0.844377444773
3 6:0.759095623001
3 7:0.611894374643
3 8:0.722984714665
3 9:0.973624463904
3 10:0.717552912169
4 5:0.591514805465
4 6:0.343795736601
4 7:0.175664523432
4 8:0.308539879515
4 9:0.565568956513
4 10:0.703709621672
5 6:0.445822487437
5 7:0.575608420277
5 8:0.455410739646
5 9:0.437176304893
5 10:0.592482215627
6 7:0.303063661281
6 8:0.264778869983
6 9:0.329777321725
6 10:0.62822929665
7 8:0.325621617947
7 9:0.495606290551
7 10:0.662016429907
8 9:0.390374946842
8 10:0.598274216021
9 10:0.63580656806
</hsp>