sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-01407-01465
X
>3F2T-X88-X23
X
>3KNK-A1296-A1351
X
>3OHK-A837-A836
X
>3OHJ-A837-A836
X
>3OHZ-A837-A836
X
>3OI1-A837-A836
X
>3OH5-A837-A836
X
</seq>
<hsp>
0 1:0.427742159958
0 2:0.430019144824
0 3:1.0
0 4:0.99795192223
0 5:0.964747292346
0 6:0.957824506739
0 7:0.941797406781
1 2:0.278700367651
1 3:0.800806324743
1 4:0.799227313968
1 5:0.786720065678
1 6:0.784929500631
1 7:0.76805101212
2 3:0.781945398567
2 4:0.7795111286
2 5:0.728211927946
2 6:0.728802846338
2 7:0.732920485352
3 4:0.0363512329382
3 5:0.199359006342
3 6:0.165860721996
3 7:0.184079929863
4 5:0.180630210497
4 6:0.151065615463
4 7:0.173601047605
5 6:0.0630628484293
5 7:0.165003817975
6 7:0.151302393727
</hsp>