sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3G78-A353-A387
X
>1YRJ-B15-A1
X
>3F1H-A2698-A2673
X
>2J01-A2591-A2566
X
>2J03-A2591-A2566
X
>3F1F-A2698-A2673
X
>3OHK-A2544-A2519
X
>3OHZ-A2544-A2519
X
</seq>
<hsp>
0 1:1.0
0 2:0.847456260433
0 3:0.893201133509
0 4:0.90674905752
0 5:0.840274938987
0 6:0.986441665971
0 7:0.895009100918
1 2:0.518865650494
1 3:0.568053746315
1 4:0.565221881172
1 5:0.521225366736
1 6:0.530202026998
1 7:0.567680443491
2 3:0.348373223728
2 4:0.353239318069
2 5:0.032934805718
2 6:0.317593643929
2 7:0.315198007771
3 4:0.0189217415208
3 5:0.338971738304
3 6:0.567005334655
3 7:0.437385006224
4 5:0.344704669748
4 6:0.566407112916
4 7:0.436960497691
5 6:0.330539704368
5 7:0.317915571923
6 7:0.23809598833
</hsp>