sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A1177-A1116
X
>2ZJR-X142-X117
X
>3KNH-A1266-A1268
X
>1N32-A1275-A1277
X
>2UUB-A1275-A1277
X
>2VQE-A1275-A1277
X
>2UUA-A1275-A1277
X
>2UXC-A1275-A1277
X
</seq>
<hsp>
0 1:0.668477435896
0 2:0.789430070026
0 3:0.930745658768
0 4:0.996046891847
0 5:0.999995414033
0 6:0.93604979068
0 7:0.937906047305
1 2:0.519380616144
1 3:0.848226193325
1 4:0.867401118519
1 5:0.927801989878
1 6:0.741919197539
1 7:0.894982069006
2 3:0.50450165496
2 4:0.564427981392
2 5:0.543160053104
2 6:0.432665105985
2 7:0.52096057407
3 4:0.240800930686
3 5:0.298334905542
3 6:0.259263309604
3 7:0.114860034996
4 5:0.209495799853
4 6:0.15201292827
4 7:0.244115972715
5 6:0.2465269166
5 7:0.240115100822
6 7:0.282257154442
</hsp>