sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YIT-0327-0306
X
>1YI2-0327-0306
X
>1YIJ-0327-0306
X
>3CC2-0327-0306
X
>3CC4-0327-0306
X
>3CCM-0327-0306
X
>3CC7-0327-0306
X
</seq>
<hsp>
0 1:0.333452479309
0 2:0.302264993137
0 3:0.738383473012
0 4:0.879203584576
0 5:0.90190627351
0 6:0.777136464348
1 2:0.306136431085
1 3:0.782397323075
1 4:1.0
1 5:0.87979038869
1 6:0.884460651188
2 3:0.851810473279
2 4:0.876489775115
2 5:0.883803435509
2 6:0.824588690481
3 4:0.63414376821
3 5:0.463067144709
3 6:0.459219016885
4 5:0.46903959239
4 6:0.255376291879
5 6:0.349638381636
</hsp>