sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-01120-01149
X
>3CME-01120-01149
X
>3CCU-01120-01149
X
>1YHQ-01120-01149
X
>3CCM-01120-01149
X
>3CPW-01120-01149
X
>2OTJ-01120-01149
X
>1M90-A1120-A1149
X
>1Q82-A1120-A1149
X
>1K9M-A1120-A1149
X
>1KD1-A1120-A1149
X
</seq>
<hsp>
0 1:0.338639319664
0 2:0.574138032262
0 3:0.554175189045
0 4:0.736477235582
0 5:0.777256179605
0 6:0.625702786823
0 7:0.73817067532
0 8:0.827845648888
0 9:0.825682171145
0 10:0.799222916593
1 2:0.568829279487
1 3:0.544956030095
1 4:0.517318580004
1 5:0.730082307508
1 6:0.523155104179
1 7:0.730457153805
1 8:0.797804524043
1 9:0.786587167247
1 10:0.759362331207
2 3:0.234384261653
2 4:0.650131822803
2 5:0.970167490759
2 6:0.716552828064
2 7:0.945007866844
2 8:0.998100876267
2 9:1.0
2 10:0.975383680088
3 4:0.565670681979
3 5:0.827685748218
3 6:0.589141396269
3 7:0.781850223211
3 8:0.838800163509
3 9:0.848947438672
3 10:0.83270020582
4 5:0.574367667942
4 6:0.415374158975
4 7:0.68202811129
4 8:0.691859414159
4 9:0.691027573787
4 10:0.678110854261
5 6:0.351856362387
5 7:0.284778754971
5 8:0.276848312416
5 9:0.293274725297
5 10:0.299915772497
6 7:0.317545777684
6 8:0.345617727887
6 9:0.329584100337
6 10:0.311672839237
7 8:0.121890166633
7 9:0.139834690521
7 10:0.160486756993
8 9:0.0630108249073
8 10:0.0989490134934
9 10:0.0562762556552
</hsp>