sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3PDR-X103-X41
X
>3PDR-A103-A41
X
>2J03-A1051-A2629
X
>2TRA-A56-A16
X
>2CSX-D58-D17
X
>2AZX-C56-C16
X
>1QU3-T58-T17
X
>1FFY-T58-T17
X
>1QU2-T58-T17
X
</seq>
<hsp>
0 1:0.200174886346
0 2:0.92547356919
0 3:0.561346459062
0 4:0.826005444883
0 5:0.912647161723
0 6:0.810160338277
0 7:0.838331475608
0 8:0.838331475608
1 2:0.999994905381
1 3:0.594817518817
1 4:0.90691260974
1 5:0.91718356897
1 6:0.888952086234
1 7:0.876632701492
1 8:0.876632701492
2 3:0.455170509769
2 4:0.419383060203
2 5:0.910882339698
2 6:0.699283406635
2 7:0.763025151646
2 8:0.763025151646
3 4:0.459565788872
3 5:0.709657490277
3 6:0.614133795062
3 7:0.615151341374
3 8:0.615151341374
4 5:0.570533636497
4 6:0.390510518671
4 7:0.503757081065
4 8:0.503757081065
5 6:0.417407964962
5 7:0.347856239881
5 8:0.347856239881
6 7:0.222278400386
6 8:0.222278400386
7 8:0.0
</hsp>