sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1L8V-A75-A77
X
>2J01-A514-A320
X
>1HR2-A75-A77
X
>3SLM-B21-B23
X
>1FJG-A1215-A1217
X
>2VQF-A1215-A1217
X
>1HR2-B76-B78
X
>3OHY-A1215-A1217
X
>3OI0-A1215-A1217
X
</seq>
<hsp>
0 1:0.776105135399
0 2:0.304606835236
0 3:1.0
0 4:0.620879708321
0 5:0.707611583963
0 6:0.489874991981
0 7:0.912258443755
0 8:0.911780343428
1 2:0.696503007715
1 3:0.598104316725
1 4:0.51309213946
1 5:0.374691817057
1 6:0.570063007219
1 7:0.535874077691
1 8:0.533768551529
2 3:0.908856601815
2 4:0.55329782651
2 5:0.640115405102
2 6:0.252546183781
2 7:0.707829148005
2 8:0.707383890652
3 4:0.688746139972
3 5:0.598174549291
3 6:0.759087139405
3 7:0.751729847565
3 8:0.748406786579
4 5:0.230269670122
4 6:0.513452770868
4 7:0.689665410075
4 8:0.689553159935
5 6:0.564756471869
5 7:0.668189082065
5 8:0.663487970539
6 7:0.476031312042
6 8:0.475176062097
7 8:0.0254812714597
</hsp>