sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A500-A307
X
>3U5D-1392-1194
X
>3KNI-A514-A320
X
>1GAX-D35-D37
X
>3F1F-A1921-A1842
X
>3F1H-A1921-A1842
X
>3R8S-A1920-A1832
X
>2QA4-912-9113
X
>3KNK-A514-A320
X
</seq>
<hsp>
0 1:0.48040855974
0 2:0.438770112174
0 3:0.634574477763
0 4:0.451895179368
0 5:0.441752595394
0 6:0.532895502721
0 7:0.716069551097
0 8:0.63208581644
1 2:0.448406362357
1 3:0.946962049018
1 4:0.551963525334
1 5:0.552147524236
1 6:0.802704976966
1 7:0.999996919528
1 8:0.862325627344
2 3:0.646958838323
2 4:0.455478017187
2 5:0.45894035934
2 6:0.76620321029
2 7:0.737911764268
2 8:0.811349066185
3 4:0.575256192681
3 5:0.569994273166
3 6:0.68771584582
3 7:0.54386706381
3 8:0.75434926127
4 5:0.0254495823943
4 6:0.503828588833
4 7:0.814682954537
4 8:0.797212398528
5 6:0.496210471794
5 7:0.810497414301
5 8:0.786433613114
6 7:0.683371347833
6 8:0.553071590978
7 8:0.46211441622
</hsp>