sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2R8S-R130-R139
X
>3I2U-B24-A5
X
>2GJW-F3-E16
X
>3SIU-F26-F2
X
>2CKY-B6-B72
X
>3MOJ-A10-A59
X
</seq>
<hsp>
0 1:0.389179377611
0 2:0.849911885852
0 3:0.525997663142
0 4:0.32360552664
0 5:0.54852597939
1 2:1.0
1 3:0.572080717818
1 4:0.528273299945
1 5:0.755601753646
2 3:0.502985743196
2 4:0.620615119541
2 5:0.572801781704
3 4:0.310844072044
3 5:0.550669622093
4 5:0.456955825234
</hsp>