sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FJG-A1079-A1051
X
>2VQE-A1421-A1419
X
>2J00-A1079-A1051
X
>2J02-A1079-A1051
X
>3KFU-L55-L15
X
>1Q96-B16-B12
X
</seq>
<hsp>
0 1:0.880495200429
0 2:0.386998852755
0 3:0.377949846548
0 4:0.287439232598
0 5:0.939572523346
1 2:0.706276179079
1 3:0.710680973902
1 4:0.654905929741
1 5:0.999998803628
2 3:0.0240047180076
2 4:0.433009312898
2 5:0.85874900745
3 4:0.428428614881
3 5:0.863453303762
4 5:0.854329483875
</hsp>