sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3EPH-E18-E45
X
>1TTT-F20-F47
X
>1QRU-B18-B45
X
>1O0B-B18-B45
X
>1QF6-B20-B47
X
>1QRT-B18-B45
X
>1TTT-E20-E47
X
>1O0C-B18-B45
X
>1FFY-T21-T48
X
>1QRS-B18-B45
X
</seq>
<hsp>
0 1:0.665457527686
0 2:0.941793991146
0 3:0.471319418081
0 4:0.785368244878
0 5:0.741437688308
0 6:0.673281922434
0 7:0.711347889058
0 8:0.757248661429
0 9:0.686358173748
1 2:0.597441785731
1 3:0.639858709925
1 4:0.767255368305
1 5:0.458530989345
1 6:0.767168982132
1 7:0.564518728111
1 8:0.510592094679
1 9:0.447372129397
2 3:0.951815591081
2 4:0.843776629813
2 5:0.357386283159
2 6:0.999994670588
2 7:0.896823737168
2 8:0.640325078331
2 9:0.686524532297
3 4:0.724635900153
3 5:0.666512615695
3 6:0.683300990676
3 7:0.338173407704
3 8:0.513275165332
3 9:0.444981093647
4 5:0.551873216611
4 6:0.852548631548
4 7:0.782566941859
4 8:0.485351308555
4 9:0.573337909404
5 6:0.852750378284
5 7:0.63385207721
5 8:0.317634181179
5 9:0.420222228846
6 7:0.746231650725
6 8:0.773721884401
6 9:0.604396685887
7 8:0.41248393922
7 9:0.312630191888
8 9:0.214236785642
</hsp>