sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-11144-11143
X
>3KNK-A162-A450
X
>3U5H-51150-51149
X
>2ZJR-X157-X369
X
>2J00-A1155-A1095
X
>3F1F-A165-A457
X
>3OH5-A162-A450
X
>3OH7-A162-A450
X
>3OHJ-A162-A450
X
>3OHK-A162-A450
X
</seq>
<hsp>
0 1:0.836805122461
0 2:0.196649115538
0 3:0.649012664864
0 4:0.783052109403
0 5:0.926346404809
0 6:0.586255306775
0 7:0.583636189761
0 8:0.679439269694
0 9:0.67541528795
1 2:0.78588554128
1 3:0.360065751238
1 4:0.999992642148
1 5:0.384660939623
1 6:0.601040702038
1 7:0.600800710166
1 8:0.508885613924
1 9:0.534075724016
2 3:0.594806504045
2 4:0.852129027089
2 5:0.853183945597
2 6:0.590794601698
2 7:0.581182515033
2 8:0.622393215558
2 9:0.611995101343
3 4:0.749284384421
3 5:0.364096284507
3 6:0.381468354079
3 7:0.385355937399
3 8:0.315189931904
3 9:0.338679568008
4 5:0.900170770223
4 6:0.522970855719
4 7:0.53343535941
4 8:0.678440373942
4 9:0.678110480232
5 6:0.520832737475
5 7:0.515785949167
5 8:0.345837082756
5 9:0.362811514584
6 7:0.040024302135
6 8:0.228380407495
6 9:0.243541312989
7 8:0.21407918854
7 9:0.223700357346
8 9:0.0474520360172
</hsp>