sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1795-A1793
X
>2ZJR-X1695-X1693
X
>3KNK-A1726-A1724
X
>3OHZ-A1727-A1725
X
>3OI1-A1727-A1725
X
>2J01-A1727-A1725
X
>3F1H-A1805-A1803
X
>3F1F-A1805-A1803
X
>3OH7-A1727-A1725
X
>3OH5-A1727-A1725
X
</seq>
<hsp>
0 1:0.467927608812
0 2:0.68510372267
0 3:0.507571101762
0 4:0.506135143718
0 5:0.409388346756
0 6:0.63222662789
0 7:0.67179114366
0 8:0.480929920379
0 9:0.497673943365
1 2:0.720297202809
1 3:0.708172085112
1 4:0.704799178998
1 5:0.737367603022
1 6:0.954524676031
1 7:0.999992915464
1 8:0.7536466925
1 9:0.759338556173
2 3:0.694172622035
2 4:0.729112412447
2 5:0.736761580612
2 6:0.750549599681
2 7:0.803932390891
2 8:0.546491838731
2 9:0.509827545116
3 4:0.0727990676922
3 5:0.388592682172
3 6:0.55192081877
3 7:0.554302472374
3 8:0.388094618306
3 9:0.389777641589
4 5:0.395064589655
4 6:0.585747143152
4 7:0.586421429628
4 8:0.422336353789
4 9:0.428567102805
5 6:0.335639300453
5 7:0.351960679103
5 8:0.260836714999
5 9:0.294578509027
6 7:0.0745845196169
6 8:0.284131914934
6 9:0.301619238597
7 8:0.322963735167
7 9:0.34129611326
8 9:0.068111602024
</hsp>