sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-B65-B108
X
>3KNI-B64-B107
X
>2FK6-R20-R27
X
>3F1H-B65-B108
X
>3F1F-B65-B108
X
>4TRA-A20-A47
X
</seq>
<hsp>
0 1:0.367382531805
0 2:0.519585992716
0 3:0.769019999064
0 4:0.763792901815
0 5:0.940460256708
1 2:0.436990459693
1 3:0.771753734503
1 4:0.767690366613
1 5:0.999994742646
2 3:0.505283937925
2 4:0.496289597217
2 5:0.718824704299
3 4:0.0206222165306
3 5:0.426251971074
4 5:0.41918419619
</hsp>