sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1TTT-D20-D47
X
>2ZM5-D20-D47
X
>2ZXU-D20-D47
X
>3F1E-V8-A1374
X
>3F1G-V8-A1374
X
>2J02-W20-W47
X
</seq>
<hsp>
0 1:0.626101281285
0 2:0.543060765746
0 3:0.999939866356
0 4:0.993645656569
0 5:1.0
1 2:0.113505790213
1 3:0.548984957538
1 4:0.524733062588
1 5:0.66013852158
2 3:0.569388828174
2 4:0.550735473308
2 5:0.672728021523
3 4:0.070786223774
3 5:0.32725265846
4 5:0.315478824836
</hsp>