sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A357-A347
X
>3F1E-A357-A347
X
>3KNH-A348-A338
X
>2UUA-A357-A347
X
>2J00-A357-A347
X
>3U5B-2438-2428
X
>2UXC-A357-A347
X
>1N32-A357-A347
X
>3R8N-A365-A355
X
>3U5F-6435-6425
X
>2J02-A357-A347
X
>1XMQ-A357-A347
X
>2VQF-A357-A347
X
>2VQE-A357-A347
X
>2UUB-A357-A347
X
>1FJG-A357-A347
X
</seq>
<hsp>
0 1:0.0639184247411
0 2:0.721045658261
0 3:0.523780005569
0 4:0.528670629234
0 5:0.536616553605
0 6:0.365966026514
0 7:0.46560934906
0 8:0.857488835325
0 9:0.622372637908
0 10:0.482378761798
0 11:0.438301824453
0 12:0.395755164235
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0 14:0.549482622724
0 15:0.677512968452
1 2:0.736587629033
1 3:0.499199761376
1 4:0.518611885139
1 5:0.527620509932
1 6:0.339989488759
1 7:0.464325536644
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1 10:0.473546264261
1 11:0.410626044458
1 12:0.398459381527
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1 14:0.533937525641
1 15:0.668611836629
2 3:0.978005129935
2 4:0.795905076031
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2 8:0.963590367153
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3 4:0.401918462688
3 5:0.618682412555
3 6:0.355130026363
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3 10:0.363197185834
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3 12:0.456320084363
3 13:0.507269188982
3 14:0.539686688608
3 15:0.774200755453
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7 12:0.291111844828
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8 11:0.625130370143
8 12:0.64520792109
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8 15:0.520035564177
9 10:0.726280560486
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11 12:0.345374995727
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12 13:0.194675389417
12 14:0.459724555867
12 15:0.465589465247
13 14:0.321367022695
13 15:0.463697827787
14 15:0.685852897945
</hsp>