sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3G6E-0822-02457
X
>1YIT-0822-02457
X
>3U5H-5824-52703
X
>3CCJ-0822-02457
X
>3U5D-1818-12702
X
>3CCM-0822-02457
X
>3CPW-0822-02457
X
>1VQ9-0822-02457
X
>1VQK-0822-02457
X
>1VQL-0822-02457
X
>1VQM-0822-02457
X
>1VQ8-0822-02457
X
</seq>
<hsp>
0 1:0.304206332981
0 2:0.733865079222
0 3:0.48078958229
0 4:0.626965778489
0 5:0.539316478777
0 6:0.378026536803
0 7:0.337651083235
0 8:0.263380224312
0 9:0.314883386858
0 10:0.27091253448
0 11:0.39945299126
1 2:0.854019519188
1 3:0.558239857702
1 4:0.835899425359
1 5:0.767437472119
1 6:0.399816070534
1 7:0.491311935802
1 8:0.355354283875
1 9:0.428209109674
1 10:0.399235996862
1 11:0.490744098371
2 3:0.999988848831
2 4:0.392566018384
2 5:0.687895624788
2 6:0.798748524344
2 7:0.708109811556
2 8:0.689395650471
2 9:0.543537817554
2 10:0.625389922441
2 11:0.641607179984
3 4:0.828232259086
3 5:0.609333860805
3 6:0.310840579802
3 7:0.393204916123
3 8:0.455857866888
3 9:0.670987134904
3 10:0.601289643512
3 11:0.472648979352
4 5:0.482800073868
4 6:0.726339297968
4 7:0.581183626531
4 8:0.628772073876
4 9:0.539259038969
4 10:0.574193363959
4 11:0.591906097339
5 6:0.546260715928
5 7:0.368169690837
5 8:0.467420726454
5 9:0.537613805272
5 10:0.49943874069
5 11:0.421457601553
6 7:0.218404139524
6 8:0.21578416971
6 9:0.444055467594
6 10:0.385695647487
6 11:0.218640154265
7 8:0.169107439452
7 9:0.353853901542
7 10:0.284306198262
7 11:0.15333944741
8 9:0.251168733185
8 10:0.180726751156
8 11:0.167519352163
9 10:0.108739653448
9 11:0.324871520435
10 11:0.287049605505
</hsp>