sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-V41-A1314
X
>3R8O-V40-A1336
X
>3U5B-21449-21583
X
>3U5B-21500-21494
X
>1XJR-A30-A27
X
>3U5F-61512-61506
X
>1XJR-A19-A18
X
</seq>
<hsp>
0 1:0.357202281119
0 2:0.84729484603
0 3:0.664442219566
0 4:0.999998152971
0 5:0.867756861426
0 6:0.985898956106
1 2:0.814239592095
1 3:0.561141414445
1 4:0.911726493274
1 5:0.737750549876
1 6:0.863829508949
2 3:0.364479674219
2 4:0.352304537615
2 5:0.373825563102
2 6:0.323982617535
3 4:0.413417886952
3 5:0.217977219311
3 6:0.375353878135
4 5:0.295305530678
4 6:0.158023690362
5 6:0.230948615831
</hsp>