sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-21177-21158
X
>3KNK-A690-A479
X
>3U5D-11925-11812
X
>3U5H-51929-51818
X
>3R8O-A968-A949
X
>1GID-A94-A97
X
</seq>
<hsp>
0 1:0.790827727707
0 2:0.635602638069
0 3:0.633146598416
0 4:0.71262371244
0 5:0.485088499237
1 2:0.807403465733
1 3:0.739265212792
1 4:0.520267589489
1 5:0.804621600934
2 3:0.279357326496
2 4:1.0
2 5:0.902259902679
3 4:0.886612129197
3 5:0.840732662887
4 5:0.556306441793
</hsp>