ClaRNA

Doublet Group distance statistics: 51906

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 A 0, 0.000, 0.001, 0.002, 0.002 max_d=0.002 avg_d=0.001 std_dev=0.001
C1' A 0, 0.000, 0.001, 0.003, 0.003 max_d=0.003 avg_d=0.001 std_dev=0.001
O4' A 0, 0.000, 0.002, 0.003, 0.003 max_d=0.003 avg_d=0.002 std_dev=0.002
C6 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
N3 A 0, 0.000, 0.002, 0.005, 0.005 max_d=0.005 avg_d=0.002 std_dev=0.002
C4 A 0, 0.000, 0.002, 0.005, 0.005 max_d=0.005 avg_d=0.002 std_dev=0.002
C3' A 0, 0.000, 0.003, 0.005, 0.005 max_d=0.005 avg_d=0.003 std_dev=0.003
O3' A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C2' A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C2 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
N4 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C5 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
P B 0, 0.000, 0.004, 0.007, 0.007 max_d=0.007 avg_d=0.004 std_dev=0.004
C4' A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
O2 A 0, 0.000, 0.005, 0.010, 0.010 max_d=0.010 avg_d=0.005 std_dev=0.005
O2' A 0, 0.000, 0.005, 0.011, 0.011 max_d=0.011 avg_d=0.005 std_dev=0.005
OP2 A 0, 0.000, 0.006, 0.012, 0.012 max_d=0.012 avg_d=0.006 std_dev=0.006
O5' B 0, 0.000, 0.006, 0.012, 0.012 max_d=0.012 avg_d=0.006 std_dev=0.006
C5' B 0, 0.000, 0.006, 0.013, 0.013 max_d=0.013 avg_d=0.006 std_dev=0.006
C5' A 0, 0.000, 0.006, 0.013, 0.013 max_d=0.013 avg_d=0.006 std_dev=0.006
O5' A 0, 0.000, 0.007, 0.014, 0.014 max_d=0.014 avg_d=0.007 std_dev=0.007
P A 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
OP2 B 0, 0.000, 0.008, 0.017, 0.017 max_d=0.017 avg_d=0.008 std_dev=0.008
OP1 A 0, 0.000, 0.009, 0.018, 0.018 max_d=0.018 avg_d=0.009 std_dev=0.009
OP1 B 0, 0.000, 0.013, 0.027, 0.027 max_d=0.027 avg_d=0.013 std_dev=0.013
C4' B 0, 0.000, 0.014, 0.027, 0.027 max_d=0.027 avg_d=0.014 std_dev=0.014
C3' B 0, 0.000, 0.016, 0.033, 0.033 max_d=0.033 avg_d=0.016 std_dev=0.016
O2' B 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
O4' B 0, 0.000, 0.021, 0.042, 0.042 max_d=0.042 avg_d=0.021 std_dev=0.021
O3' B 0, 0.000, 0.022, 0.043, 0.043 max_d=0.043 avg_d=0.022 std_dev=0.022
C2' B 0, 0.000, 0.023, 0.045, 0.045 max_d=0.045 avg_d=0.023 std_dev=0.023
N3 B 0, 0.000, 0.026, 0.052, 0.052 max_d=0.052 avg_d=0.026 std_dev=0.026
C2 B 0, 0.000, 0.027, 0.054, 0.054 max_d=0.054 avg_d=0.027 std_dev=0.027
N1 B 0, 0.000, 0.030, 0.060, 0.060 max_d=0.060 avg_d=0.030 std_dev=0.030
C1' B 0, 0.000, 0.032, 0.064, 0.064 max_d=0.064 avg_d=0.032 std_dev=0.032
N2 B 0, 0.000, 0.034, 0.067, 0.067 max_d=0.067 avg_d=0.034 std_dev=0.034
C4 B 0, 0.000, 0.034, 0.069, 0.069 max_d=0.069 avg_d=0.034 std_dev=0.034
C6 B 0, 0.000, 0.036, 0.073, 0.073 max_d=0.073 avg_d=0.036 std_dev=0.036
C5 B 0, 0.000, 0.040, 0.079, 0.079 max_d=0.079 avg_d=0.040 std_dev=0.040
N9 B 0, 0.000, 0.040, 0.080, 0.080 max_d=0.080 avg_d=0.040 std_dev=0.040
C8 B 0, 0.000, 0.043, 0.086, 0.086 max_d=0.086 avg_d=0.043 std_dev=0.043
O6 B 0, 0.000, 0.043, 0.087, 0.087 max_d=0.087 avg_d=0.043 std_dev=0.043
N7 B 0, 0.000, 0.047, 0.094, 0.094 max_d=0.094 avg_d=0.047 std_dev=0.047

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00
O2 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
OP1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
OP2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
P 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00
C2 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.02 0.01 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.00
C2' 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
C3' 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00
C4 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00
C4' 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.02 0.01 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00
C5 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.02 0.00 0.00 0.01 0.02 0.02 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
C5' 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00
C6 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.02 0.00 0.01 0.01 0.02 0.02 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
N1 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00
N3 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.02 0.01 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.00
N4 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00
O2 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.02 0.01 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.00
O2' 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
O3' 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00
O4' 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.02 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00
O5' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00
OP1 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.02 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.00
OP2 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.02 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00
P 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.02 0.01 0.01
C2 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.02 0.01 0.02
C2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.01 0.01
C3' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01
C4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01
C5' 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.02 0.01 0.01 0.00
C6 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.02 0.01 0.02
C8 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01
N1 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.02 0.01 0.02
N2 0.01 0.00 0.01 0.02 0.01 0.02 0.00 0.02 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.02 0.01 0.02 0.00 0.03 0.02 0.02
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.02 0.01 0.01
N7 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.01 0.01
N9 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.02 0.01 0.01
O2' 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.01 0.02 0.01 0.01
O3' 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01 0.01 0.02 0.00 0.00 0.00 0.01 0.01 0.00 0.00
O4' 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00
O5' 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.02 0.01 0.02 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.02 0.01 0.00 0.00
O6 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.03 0.02 0.03
OP1 0.02 0.02 0.02 0.01 0.02 0.01 0.02 0.01 0.02 0.01 0.02 0.03 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.03 0.00 0.01 0.00
OP2 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.02 0.01 0.00 0.00
P 0.01 0.02 0.01 0.00 0.01 0.00 0.01 0.00 0.02 0.01 0.02 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.03 0.00 0.00 0.00