sequences=20
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Q81-A1135-A1155
X
>3CPW-01135-01155
X
>3CCR-01135-01155
X
>3CCM-01135-01155
X
>1M90-A1135-A1155
X
>1K9M-A1135-A1155
X
>1QVG-01135-01155
X
>1KD1-A1135-A1155
X
>1NJI-A1135-A1155
X
>1K8A-A1135-A1155
X
>1Q82-A1135-A1155
X
>1JJ2-01135-01155
X
>1N8R-A1135-A1155
X
>3CXC-01135-01155
X
>1HC8-D21-D41
X
>1Y39-D21-D41
X
>1Y39-C21-C41
X
>1QA6-D21-D41
X
>1QA6-C21-C41
X
>1HC8-C21-C41
X
</seq>
<hsp>
0 1:0.256079561636
0 2:0.29378013443
0 3:0.39613196271
0 4:0.277528746537
0 5:0.243635845211
0 6:0.235583318975
0 7:0.262242178368
0 8:0.29162309022
0 9:0.270560550176
0 10:0.257755197733
0 11:0.359652545264
0 12:0.27892540498
0 13:0.366967659025
0 14:0.999993963108
0 15:0.770349593373
0 16:0.820476630642
0 17:0.730987148278
0 18:0.731178095215
0 19:0.839345656921
1 2:0.216244463309
1 3:0.373582592594
1 4:0.209886262703
1 5:0.204963011802
1 6:0.197202364829
1 7:0.195272273142
1 8:0.241550222555
1 9:0.192554060726
1 10:0.184544479149
1 11:0.311651148504
1 12:0.208772899549
1 13:0.258843471002
1 14:0.846060025998
1 15:0.591524012453
1 16:0.663396828906
1 17:0.638019972098
1 18:0.638045582547
1 19:0.704577559237
2 3:0.235905027894
2 4:0.361925746436
2 5:0.297254674353
2 6:0.276200439004
2 7:0.264197848169
2 8:0.360733366737
2 9:0.322660138618
2 10:0.265224723065
2 11:0.395271430465
2 12:0.31672585988
2 13:0.393213537424
2 14:0.98330241048
2 15:0.750633655098
2 16:0.721705025504
2 17:0.737382122439
2 18:0.737381574479
2 19:0.821361914294
3 4:0.55031586634
3 5:0.487482141635
3 6:0.318294503921
3 7:0.448950126663
3 8:0.544441230809
3 9:0.487824712448
3 10:0.423079919563
3 11:0.589412208463
3 12:0.463274243054
3 13:0.438362329093
3 14:0.986585231781
3 15:0.840988467551
3 16:0.801906465472
3 17:0.729396971849
3 18:0.729511716886
3 19:0.866312669547
4 5:0.117863956223
4 6:0.324880775018
4 7:0.170176523137
4 8:0.101938319947
4 9:0.131664765545
4 10:0.196969788356
4 11:0.177544175045
4 12:0.198497387061
4 13:0.353071521972
4 14:0.911368623267
4 15:0.599534024913
4 16:0.690345106797
4 17:0.692106406219
4 18:0.692124217035
4 19:0.727843922771
5 6:0.289707435621
5 7:0.0685924856344
5 8:0.0840561619976
5 9:0.0919693369109
5 10:0.115837827159
5 11:0.143059043868
5 12:0.139760854973
5 13:0.342132531559
5 14:0.949261210692
5 15:0.650044054947
5 16:0.690843450258
5 17:0.691116661136
5 18:0.691164867689
5 19:0.748001122714
6 7:0.266549453441
6 8:0.325359469201
6 9:0.255798038649
6 10:0.216176018087
6 11:0.398669044194
6 12:0.230137201788
6 13:0.165100843443
6 14:0.819752086403
6 15:0.643363691893
6 16:0.707415182398
6 17:0.56267196808
6 18:0.562898854918
6 19:0.68643092967
7 8:0.12482303295
7 9:0.0917637830373
7 10:0.0759816451952
7 11:0.169839267201
7 12:0.10982247827
7 13:0.319712098027
7 14:0.938441047988
7 15:0.650618170237
7 16:0.673919815165
7 17:0.670016311164
7 18:0.670073046967
7 19:0.735976527502
8 9:0.0890713251551
8 10:0.14719633218
8 11:0.111152720073
8 12:0.158005657443
8 13:0.349009655399
8 14:0.91998275606
8 15:0.604435494537
8 16:0.659282852824
8 17:0.660740117212
8 18:0.660768940968
8 19:0.709560023983
9 10:0.0943840341552
9 11:0.169729235128
9 12:0.090388508378
9 13:0.277528937779
9 14:0.881551231127
9 15:0.591751467947
9 16:0.652363824086
9 17:0.619189193771
9 18:0.619252073837
9 19:0.685713699229
10 11:0.20196509349
10 12:0.0888439702275
10 13:0.261253264602
10 14:0.886836239628
10 15:0.616783453707
10 16:0.644483661938
10 17:0.609425920606
10 18:0.609514431786
10 19:0.688357994491
11 12:0.231921430372
11 13:0.413548706596
11 14:0.949980133844
11 15:0.617858771493
11 16:0.625952480345
11 17:0.686579578432
11 18:0.686543050191
11 19:0.709906394308
12 13:0.256954961129
12 14:0.89555812297
12 15:0.627801542355
12 16:0.693723758075
12 17:0.627723906798
12 18:0.62787729227
12 19:0.71295110857
13 14:0.684865764838
13 15:0.51562937959
13 16:0.628762832174
13 17:0.452876720025
13 18:0.453104143439
13 19:0.561443834732
14 15:0.430273099012
14 16:0.630285609182
14 17:0.453679147073
14 18:0.453411240116
14 19:0.359655372951
15 16:0.408954709795
15 17:0.455885929738
15 18:0.455476204752
15 19:0.326672724817
16 17:0.482077781386
16 18:0.48134829513
16 19:0.350974787315
17 18:0.00114854322968
17 19:0.280736557458
18 19:0.280130066529
</hsp>