sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A1091-A1111
X
>3F1H-A1091-A1111
X
>3CCS-01135-01155
X
>3CC4-01135-01155
X
>2ZJR-X985-X1005
X
>3CMA-01135-01155
X
>3CC2-01135-01155
X
>1YHQ-01135-01155
X
</seq>
<hsp>
0 1:0.011333694905
0 2:0.684727270139
0 3:0.764907252627
0 4:0.99937751055
0 5:0.845919851726
0 6:0.843597489467
0 7:0.801800364044
1 2:0.686641571409
1 3:0.766423216982
1 4:0.999998172123
1 5:0.847570422611
1 6:0.845802944795
1 7:0.80466022206
2 3:0.185901844947
2 4:0.445969716376
2 5:0.326037848429
2 6:0.304590986553
2 7:0.278310847577
3 4:0.406110323632
3 5:0.3075205124
3 6:0.229505240294
3 7:0.219945674921
4 5:0.528527436377
4 6:0.462543240692
4 7:0.499128161236
5 6:0.142941071721
5 7:0.178030633774
6 7:0.0814389764664
</hsp>