sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUB-A1321-A1353
X
>2J00-A1321-A1353
X
>2J02-A1321-A1353
X
>2VQF-A1321-A1353
X
>1N32-A1321-A1353
X
>2UUA-A1321-A1353
X
>2UXC-A1321-A1353
X
>1XMQ-A1316-A1347
X
>2VQE-A1321-A1353
X
>1FJG-A1321-A1353
X
</seq>
<hsp>
0 1:0.683170272111
0 2:0.660943039267
0 3:0.561042475854
0 4:0.617380297523
0 5:0.500258927148
0 6:0.4108093759
0 7:0.674358645177
0 8:0.668592119461
0 9:0.508357258341
1 2:0.0509980379527
1 3:0.766449728212
1 4:0.753764057645
1 5:0.760524835586
1 6:0.521903314255
1 7:0.937117509622
1 8:0.963987377134
1 9:0.999971908457
2 3:0.770231853437
2 4:0.751095610169
2 5:0.760087554165
2 6:0.521205221134
2 7:0.943484566809
2 8:0.965308399501
2 9:0.986942430427
3 4:0.348394677222
3 5:0.302921913561
3 6:0.317586366184
3 7:0.341747753463
3 8:0.300239257152
3 9:0.403658997255
4 5:0.287324277632
4 6:0.32589140121
4 7:0.561720554509
4 8:0.436595105653
4 9:0.483900046621
5 6:0.31232936964
5 7:0.384920997292
5 8:0.433723323899
5 9:0.402195522001
6 7:0.536346098578
6 8:0.518172792253
6 9:0.539534978884
7 8:0.502054133588
7 9:0.486027601392
8 9:0.405683139477
</hsp>