sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CC2-0743-0744
X
>2J00-A589-A590
X
>3G71-02542-02543
X
>3AEV-C5-C6
X
>3R8S-A2593-A2594
X
>3CME-0743-0744
X
>3I56-01868-01869
X
>1VQN-0743-0744
X
>1VQ6-02542-02543
X
>3F1G-Z73-Z74
X
>3OH7-A2430-A2431
X
>2QEX-0351-0352
X
</seq>
<hsp>
0 1:0.64061793247
0 2:0.544700710647
0 3:0.823411869932
0 4:0.61272250547
0 5:0.154157755147
0 6:0.241134276075
0 7:0.224805245931
0 8:0.544098067232
0 9:0.413727298805
0 10:0.461698078996
0 11:0.433102988217
1 2:0.523149656763
1 3:0.896973069635
1 4:0.533014524432
1 5:0.690589995264
1 6:0.486639588915
1 7:0.582334294599
1 8:0.462475523846
1 9:0.506345929389
1 10:0.549815812192
1 11:0.446923526991
2 3:0.99999460189
2 4:0.740419954012
2 5:0.639958520388
2 6:0.564587711041
2 7:0.509936493344
2 8:0.319686768287
2 9:0.611643771945
2 10:0.521940024609
2 11:0.384108532545
3 4:0.711106384158
3 5:0.87539010079
3 6:0.808292440789
3 7:0.693717665391
3 8:0.94223281247
3 9:0.827404618851
3 10:0.790941773962
3 11:0.770465177743
4 5:0.615159674046
4 6:0.579303115812
4 7:0.447199580256
4 8:0.530962337189
4 9:0.472497530263
4 10:0.370765710278
4 11:0.52846427083
5 6:0.265104773537
5 7:0.289388302131
5 8:0.583519204309
5 9:0.365850457117
5 10:0.464369223374
5 11:0.472768258749
6 7:0.327813486561
6 8:0.542780708546
6 9:0.320291127842
6 10:0.473972337402
6 11:0.390486582599
7 8:0.445212314275
7 9:0.380655636707
7 10:0.289505864252
7 11:0.346186878555
8 9:0.425210957758
8 10:0.341103065938
8 11:0.262703273666
9 10:0.359834191998
9 11:0.296311458449
10 11:0.322751222523
</hsp>