sequences=20
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A2176-A2177
X
>2ZJR-X564-X565
X
>1VQM-01754-01755
X
>1QVG-02255-02256
X
>3G6E-01530-01531
X
>3CCR-0753-0754
X
>1FG0-A246-A247
X
>3CPW-01530-01531
X
>1VQM-01091-01092
X
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X
>3R8S-A631-A632
X
>3OI1-A1792-A1793
X
>1YIJ-01754-01755
X
>3G71-02255-02256
X
>3CCR-01754-01755
X
>3U5B-2751-2752
X
>1YI2-01754-01755
X
>3CCV-01091-01092
X
>1K8A-A1091-A1092
X
>1VQ5-01091-01092
X
</seq>
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