sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHJ-A1217-A1218
X
>3U5D-11753-11754
X
>1S72-0680-0681
X
>3G78-A58-A59
X
>3F1H-A492-A493
X
>3U5D-12193-12194
X
>3U5H-5946-5947
X
>1Q82-A578-A579
X
>1AV6-B4-B5
X
>3F1H-A365-A366
X
>3GX2-A36-A37
X
>3U5B-2959-2960
X
>1VQO-0203-0204
X
>3CC4-0203-0204
X
>1YHQ-0203-0204
X
>1K9M-A203-A204
X
</seq>
<hsp>
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0 2:0.493815519304
0 3:0.338894720527
0 4:0.466498330391
0 5:0.297955540696
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0 15:0.430140546753
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12 13:0.104662365988
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12 15:0.222007498942
13 14:0.0686123212823
13 15:0.194222497741
14 15:0.163864894351
</hsp>