sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1EHZ-A34-A35
X
>3U5D-13046-13047
X
>1DDY-A2-A3
X
>3CMA-0508-0509
X
>1VQ6-0508-0509
X
>3CCS-0508-0509
X
>1VQM-0508-0509
X
>1FJG-A1264-A1265
X
>2H0Z-B82-B83
X
>2NZ4-S98-S99
X
</seq>
<hsp>
0 1:0.344695659257
0 2:0.584869934891
0 3:0.851389335927
0 4:0.810115601077
0 5:0.78928184245
0 6:0.755013410424
0 7:0.64563539968
0 8:0.644003400626
0 9:0.69619798874
1 2:0.468120317277
1 3:0.808001910628
1 4:0.778554458729
1 5:0.763388507853
1 6:0.733175392517
1 7:0.61536004395
1 8:0.618265102358
1 9:0.700582927646
2 3:1.0
2 4:0.992344375707
2 5:0.938559003154
2 6:0.940612532628
2 7:0.825614433487
2 8:0.80632273721
2 9:0.737885040153
3 4:0.0880412720449
3 5:0.106974433174
3 6:0.143926922928
3 7:0.352330649229
3 8:0.31600250366
3 9:0.41184829457
4 5:0.134552290105
4 6:0.0982018060718
4 7:0.316736205547
4 8:0.292066132201
4 9:0.409752133272
5 6:0.154316745082
5 7:0.291285101191
5 8:0.242101900473
5 9:0.332779903833
6 7:0.271129605403
6 8:0.244436232941
6 9:0.362881208679
7 8:0.0887932343644
7 9:0.310706607867
8 9:0.256208784716
</hsp>