sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCE-0805-0806
X
>3OWW-A51-A52
X
>1Y3O-B7-B8
X
>2PXB-B26-B27
X
>1VQ6-0805-0806
X
>1M90-A805-A806
X
>3CD6-01879-01880
X
>2PXD-B26-B27
X
>2QA4-01878-01879
X
</seq>
<hsp>
0 1:0.555612184061
0 2:0.525522660786
0 3:0.658805022137
0 4:0.235780309558
0 5:0.241764883648
0 6:0.785782542451
0 7:0.817263826424
0 8:1.0
1 2:0.218288817757
1 3:0.30139029672
1 4:0.505217387436
1 5:0.506066789686
1 6:0.6347250086
1 7:0.447069386276
1 8:0.794108866154
2 3:0.20226829813
2 4:0.455355350795
2 5:0.463884890352
2 6:0.634608679785
2 7:0.434044421696
2 8:0.791089334228
3 4:0.564821346305
3 5:0.578416139697
3 6:0.62421826457
3 7:0.342510229725
3 8:0.741554360077
4 5:0.0665975229313
4 6:0.667841572483
4 7:0.656452911242
4 8:0.883798797141
5 6:0.708987082762
5 7:0.666387444389
5 8:0.920919484991
6 7:0.514213555469
6 8:0.264215493569
7 8:0.575639391605
</hsp>