sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QEX-02638-02640
X
>1M90-A2638-A2640
X
>3CXC-01205-01207
X
>3R8T-A1135-A1137
X
>1YIJ-01205-01207
X
>3CCV-01205-01207
X
</seq>
<hsp>
0 1:0.313902025902
0 2:0.893796412706
0 3:0.991138040687
0 4:0.924173553842
0 5:1.0
1 2:0.891954324629
1 3:0.967365784433
1 4:0.871844142287
1 5:0.930487682922
2 3:0.308174830082
2 4:0.265434462896
2 5:0.369610221337
3 4:0.392317372565
3 5:0.439357053607
4 5:0.186517647994
</hsp>