sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2344-A2345
X
>3OGE-A1411-A1412
X
>3OHK-A1388-A1389
X
>3OH5-A2565-A2566
X
>1VQ5-01584-01585
X
>3CCE-0473-0475
X
>3OHK-A1779-A1780
X
>2OTJ-01584-01585
X
>1VQO-01584-01585
X
>3OH5-A1779-A1780
X
</seq>
<hsp>
0 1:0.772415783191
0 2:0.999998444887
0 3:0.979398882509
0 4:0.777168085571
0 5:0.951895663599
0 6:0.877604314648
0 7:0.790409981474
0 8:0.72282508183
0 9:0.933330621799
1 2:0.489836560922
1 3:0.547249789858
1 4:0.783997273583
1 5:0.66462849416
1 6:0.903968811444
1 7:0.778398879705
1 8:0.808617895798
1 9:0.821542246797
2 3:0.228165352443
2 4:0.658539737146
2 5:0.455522629296
2 6:0.796991218627
2 7:0.662262232422
2 8:0.733131100872
2 9:0.678452109392
3 4:0.578371561543
3 5:0.287230080071
3 6:0.700055101124
3 7:0.556095297074
3 8:0.621425251131
3 9:0.565152877932
4 5:0.613278619842
4 6:0.223160765578
4 7:0.11315158814
4 8:0.174351757046
4 9:0.330825419976
5 6:0.747747456885
5 7:0.569970252465
5 8:0.61094424115
5 9:0.587532681013
6 7:0.20306179635
6 8:0.216977448418
6 9:0.290155641831
7 8:0.118213808471
7 9:0.239549778422
8 9:0.295650783483
</hsp>