sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OI0-A288-A289
X
>1ASZ-R43-R44
X
>2J00-A288-A289
X
>2J02-A1152-A1153
X
>3V7E-D121-D122
X
>3OHY-A768-A769
X
>1VQL-0177-0178
X
>1QVG-0483-0484
X
>2UUB-A768-A769
X
>3I56-0483-0484
X
</seq>
<hsp>
0 1:0.948134519679
0 2:0.432998528373
0 3:0.755574143438
0 4:0.859374099388
0 5:0.947742421539
0 6:0.614809817292
0 7:0.733102800936
0 8:0.999986906568
0 9:0.924933759753
1 2:0.706090117666
1 3:0.765135522492
1 4:0.619621839801
1 5:0.70221373289
1 6:0.655555675867
1 7:0.775946720995
1 8:0.716092097227
1 9:0.761053526698
2 3:0.479586967105
2 4:0.476690936762
2 5:0.567029851773
2 6:0.196299802033
2 7:0.39931293304
2 8:0.60317438022
2 9:0.556261849878
3 4:0.591603957441
3 5:0.399587374653
3 6:0.40304434331
3 7:0.293668783194
3 8:0.386180925683
3 9:0.299817268694
4 5:0.368906603136
4 6:0.322382407716
4 7:0.472265982966
4 8:0.433540476953
4 9:0.481962928561
5 6:0.381825728113
5 7:0.322355537014
5 8:0.201941575507
5 9:0.200103745045
6 7:0.289558114653
6 8:0.429200071263
6 9:0.398127076787
7 8:0.36505136138
7 9:0.240401820417
8 9:0.163157586968
</hsp>