sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQ7-02666-02667
X
>1YJ9-01092-01093
X
>1YJN-01057-01058
X
>1YIJ-01092-01093
X
>1VQ5-01057-01058
X
>3CXC-01057-01058
X
>3R8S-A1694-A1695
X
>3R8S-A2734-A2735
X
</seq>
<hsp>
0 1:0.524162763181
0 2:0.446728417206
0 3:0.5247280083
0 4:0.447754633132
0 5:0.462975926214
0 6:1.0
0 7:0.792361385834
1 2:0.487140880648
1 3:0.167431113821
1 4:0.335251880904
1 5:0.518024235167
1 6:0.704221578315
1 7:0.596134155781
2 3:0.394937106162
2 4:0.183985237996
2 5:0.140869121033
2 6:0.649823881213
2 7:0.483564944435
3 4:0.249919292461
3 5:0.432832665409
3 6:0.662745440879
3 7:0.563108389604
4 5:0.232753093227
4 6:0.613009059693
4 7:0.435335450401
5 6:0.63495631709
5 7:0.478331366348
6 7:0.434443129673
</hsp>