sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1JJ2-01574-01576
X
>3CCE-01574-01576
X
>3G6E-01574-01576
X
>3G71-02666-02667
X
>1VQ7-01574-01576
X
>1VQ7-0473-0475
X
>3CME-0473-0475
X
</seq>
<hsp>
0 1:0.286539356303
0 2:0.215694593202
0 3:0.960294056218
0 4:0.0963847548006
0 5:0.653257205774
0 6:0.651004363726
1 2:0.099519630509
1 3:0.986281032622
1 4:0.282362050843
1 5:0.676400451123
1 6:0.6821999072
2 3:0.970365360933
2 4:0.197885134752
2 5:0.664407561242
2 6:0.662704985563
3 4:1.0
3 5:0.343515390157
3 6:0.430935657477
4 5:0.696403583614
4 6:0.676137275384
5 6:0.186379545569
</hsp>