sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A1109-A1108
X
>3KNK-A1846-A1845
X
>3KNI-A868-A867
X
>3ADC-D20-D19
X
>3R8N-A1299-A1298
X
>3ADD-D20-D19
X
>3ADD-C20-C19
X
>3R8T-A242-A241
X
>3R8T-A1125-A1124
X
>3OI1-A1024-A1023
X
>3OHZ-A1024-A1023
X
</seq>
<hsp>
0 1:0.646563686091
0 2:0.543115976105
0 3:0.915351240628
0 4:0.728741665899
0 5:0.886648850999
0 6:0.676140873805
0 7:0.702404385756
0 8:0.787653378707
0 9:0.65981913517
0 10:0.667133421842
1 2:0.569204898023
1 3:1.0
1 4:0.506538002722
1 5:0.992186174493
1 6:0.860693518101
1 7:0.599718671572
1 8:0.641902334648
1 9:0.660583823354
1 10:0.656388483524
2 3:0.69396802021
2 4:0.282967928462
2 5:0.563154133941
2 6:0.397556882104
2 7:0.250187427401
2 8:0.416966318496
2 9:0.275131532015
2 10:0.280348385025
3 4:0.709235421017
3 5:0.396264212529
3 6:0.524397722791
3 7:0.608441029367
3 8:0.547729115705
3 9:0.735940971885
3 10:0.726616148519
4 5:0.641549230946
4 6:0.573874708477
4 7:0.197805596218
4 8:0.360916116718
4 9:0.379213811005
4 10:0.370293218167
5 6:0.263158131146
5 7:0.508304356728
5 8:0.495407516353
5 9:0.526902462296
5 10:0.52362232334
6 7:0.441865935519
6 8:0.460894259499
6 9:0.370345302475
6 10:0.374510911627
7 8:0.296624499732
7 9:0.333829543608
7 10:0.325686227138
8 9:0.357515119595
8 10:0.342265622547
9 10:0.0484922091957
</hsp>