sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A1911-A1910
X
>2ZZM-B16-B17
X
>3F1G-Y16-Y17
X
>3F1E-Y16-Y17
X
>3F1F-A1990-A1989
X
>3U5F-61278-61277
X
>3F1H-A1990-A1989
X
>3KNK-A1911-A1910
X
>1J1U-B16-B17
X
>3F1F-A1936-A1937
X
>3F1H-A1936-A1937
X
>3U5B-21266-21265
X
>1Q81-A2078-A2079
X
>3R8S-A1935-A1936
X
>3OHZ-A1858-A1859
X
>3OI1-A1858-A1859
X
</seq>
<hsp>
0 1:0.999999330908
0 2:0.588732694288
0 3:0.586335178131
0 4:0.535048308576
0 5:0.353034853046
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12 13:0.432003757632
12 14:0.367607872969
12 15:0.403698283973
13 14:0.336245645422
13 15:0.307608260089
14 15:0.0725841348121
</hsp>