sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2673-A2716
X
>3R8N-A370-A385
X
>3F1E-A362-A377
X
>3R8O-A370-A385
X
>3R8S-A2674-A2717
X
>1N32-A362-A377
X
>3U5H-5873-5869
X
>2J02-A362-A377
X
>2J00-A362-A377
X
</seq>
<hsp>
0 1:0.613373488962
0 2:0.79171842866
0 3:0.643609325027
0 4:0.388537965883
0 5:0.626117375965
0 6:0.727965462186
0 7:0.936869543016
0 8:0.919869893493
1 2:0.441766751286
1 3:0.540764521091
1 4:0.513323691499
1 5:0.503185851588
1 6:0.521489799731
1 7:0.759809443461
1 8:0.752034753926
2 3:0.544296942407
2 4:0.800119072698
2 5:0.447350518298
2 6:0.369054492907
2 7:0.677833589545
2 8:0.664930521282
3 4:0.623553694698
3 5:0.439155584089
3 6:0.594779663276
3 7:0.638031286967
3 8:0.631457023495
4 5:0.624550981703
4 6:0.702650166468
4 7:0.999997920481
4 8:0.993596185858
5 6:0.56431243982
5 7:0.857022569808
5 8:0.838636751218
6 7:0.69910534415
6 8:0.696913890055
7 8:0.0407870994122
</hsp>