sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUB-A1176-A1029
X
>1YFG-A12-A7
X
>1F7V-B12-B7
X
>2CSX-C12-C7
X
>1F7U-B12-B7
X
>1EHZ-A12-A7
X
</seq>
<hsp>
0 1:0.767190531292
0 2:1.0
0 3:0.570311584075
0 4:0.871284789562
0 5:0.830076604041
1 2:0.549948267149
1 3:0.421308017801
1 4:0.386997099036
1 5:0.438768891382
2 3:0.514065076543
2 4:0.195771622086
2 5:0.530963576531
3 4:0.390747605044
3 5:0.446380239262
4 5:0.386054977629
</hsp>