sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Q81-A880-A879
X
>2J00-A462-A463
X
>2J02-A462-A463
X
>2ZH4-B32-B33
X
>3R8N-A1061-A1062
X
>1XMQ-A1035-A1036
X
>1ET4-D28-D29
X
>1DDY-C28-C29
X
>1ET4-A28-A29
X
>1ET4-E28-E29
X
>1DDY-G28-G29
X
>1ET4-B28-B29
X
</seq>
<hsp>
0 1:0.45445838542
0 2:0.468922547913
0 3:0.389926857096
0 4:0.612808970531
0 5:0.586244055563
0 6:0.872832574818
0 7:0.692800873098
0 8:0.911257115604
0 9:0.847742535214
0 10:0.986540887695
0 11:1.0
1 2:0.0349152088722
1 3:0.435790504298
1 4:0.815352880087
1 5:0.687075904375
1 6:0.815383851914
1 7:0.661635890956
1 8:0.865413063564
1 9:0.839084718759
1 10:0.913133079772
1 11:0.948180679724
2 3:0.442403488893
2 4:0.832376426805
2 5:0.702528232419
2 6:0.813837274918
2 7:0.666191346273
2 8:0.865530268611
2 9:0.839398151982
2 10:0.911724042922
2 11:0.94461329413
3 4:0.576061764489
3 5:0.544056621571
3 6:0.597285754716
3 7:0.450087580466
3 8:0.629285922294
3 9:0.579757363382
3 10:0.697534421061
3 11:0.714135826409
4 5:0.330268858833
4 6:0.649420806846
4 7:0.480764128515
4 8:0.659366968403
4 9:0.590438776252
4 10:0.722940760972
4 11:0.757079729743
5 6:0.569873497941
5 7:0.437700332452
5 8:0.613742945625
5 9:0.589690467231
5 10:0.67786433526
5 11:0.749557538554
6 7:0.234627026277
6 8:0.12862796
6 9:0.188982045062
6 10:0.158430248573
6 11:0.230478255364
7 8:0.262822806457
7 9:0.231067667872
7 10:0.319058515114
7 11:0.365492868957
8 9:0.125528526862
8 10:0.116287598099
8 11:0.166636089939
9 10:0.197341129171
9 11:0.182794437457
10 11:0.155718704068
</hsp>