sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2PXQ-B17-B32
X
>2J01-A1200-A594
X
>2PXE-B17-B32
X
>2HO6-A4-B11
X
>2H0S-A6-B11
X
>2H0W-A4-B11
X
>2H0X-A5-B11
X
>2GCS-A5-B11
X
>3B4A-A6-B11
X
>2GCV-A4-B11
X
</seq>
<hsp>
0 1:0.678076534908
0 2:0.403031361043
0 3:0.808543190441
0 4:0.978286376589
0 5:0.948442297455
0 6:0.939022721454
0 7:0.885652635732
0 8:0.900453780709
0 9:0.905031907678
1 2:0.906899106042
1 3:0.954452526326
1 4:0.927451969116
1 5:0.943292871092
1 6:0.921187855518
1 7:0.882611840126
1 8:0.886164802808
1 9:0.880368462472
2 3:0.811958456595
2 4:1.0
2 5:0.945753092829
2 6:0.963983306226
2 7:0.927257757877
2 8:0.966414525928
2 9:0.9159611191
3 4:0.295436133134
3 5:0.275203125932
3 6:0.243691391328
3 7:0.240000695243
3 8:0.275785254038
3 9:0.265484529387
4 5:0.206164900803
4 6:0.096236196341
4 7:0.186014408922
4 8:0.256439462749
4 9:0.173034082041
5 6:0.138111145632
5 7:0.148604528015
5 8:0.283665247789
5 9:0.122612721616
6 7:0.105064433029
6 8:0.222327539936
6 9:0.121065007919
7 8:0.178120068806
7 9:0.0999530481784
8 9:0.205711775454
</hsp>