sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1E-A1105-A1116
X
>3F1G-A1105-A1116
X
>1XMQ-A1100-A1111
X
>1FJG-A1105-A1116
X
>2VQF-A1105-A1116
X
>2VQE-A1105-A1116
X
>2UXC-A1105-A1116
X
>3F1E-A1473-A1476
X
>3F1G-A1473-A1476
X
>1N32-A1105-A1116
X
</seq>
<hsp>
0 1:0.0245517773098
0 2:0.684763784124
0 3:0.524072791094
0 4:0.981663304063
0 5:0.981663304063
0 6:0.644764451928
0 7:0.801599441253
0 8:0.805833810696
0 9:0.629426921863
1 2:0.687839380712
1 3:0.539526393922
1 4:0.991519646849
1 5:0.991519646849
1 6:0.646193193988
1 7:0.793024025893
1 8:0.797452469626
1 9:0.631171338826
2 3:0.646620252972
2 4:0.489976512392
2 5:0.489976512392
2 6:0.310689861722
2 7:0.755182032656
2 8:0.742169511722
2 9:0.42419189665
3 4:0.736624806455
3 5:0.736624806455
3 6:0.531108011351
3 7:0.838038419935
3 8:0.832610427693
3 9:0.53830674757
4 5:4.51248070317e-07
4 6:0.640561632035
4 7:1.0
4 8:0.983854743453
4 9:0.607306770063
5 6:0.640561632035
5 7:1.0
5 8:0.983854743453
5 9:0.607306770063
6 7:0.562124183563
6 8:0.547617720408
6 9:0.314708012115
7 8:0.0364015907582
7 9:0.456565978314
8 9:0.446942453199
</hsp>