sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2V3C-N60-N75
X
>3U5H-51382-5609
X
>3R8S-A1244-A584
X
>3F1H-A1270-A603
X
>3F1F-A1270-A603
X
>2J02-A195-A170
X
</seq>
<hsp>
0 1:0.999990548957
0 2:0.828830561188
0 3:0.97234539884
0 4:0.973596095668
0 5:0.784319150481
1 2:0.344155867401
1 3:0.371220662604
1 4:0.373307778052
1 5:0.51902611804
2 3:0.356314319767
2 4:0.373387840075
2 5:0.376013602839
3 4:0.040697100093
3 5:0.461900548181
4 5:0.454463110978
</hsp>