sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A2485-A2430
X
>3F1F-A2485-A2430
X
>2J01-A2378-A2323
X
>2J03-A2378-A2323
X
>3KNI-A2406-A2351
X
>1N8R-A2377-A2322
X
</seq>
<hsp>
0 1:0.107826381363
0 2:0.750040803796
0 3:0.703994565407
0 4:0.730452883795
0 5:1.0
1 2:0.708813035268
1 3:0.666993465492
1 4:0.663117738181
1 5:0.93853951428
2 3:0.110896853137
2 4:0.64661655516
2 5:0.800385569975
3 4:0.657390231694
3 5:0.782415679405
4 5:0.768756015383
</hsp>