sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J02-A1473-A1476
X
>3OGY-A1473-A1476
X
>3OI0-A1473-A1476
X
>3OHC-A1473-A1476
X
>3OHY-A1473-A1476
X
>3CCM-02377-02322
X
</seq>
<hsp>
0 1:0.401850930334
0 2:0.338722914352
0 3:0.460273921713
0 4:0.311418770053
0 5:0.999999382091
1 2:0.193138603646
1 3:0.135703724146
1 4:0.214164380749
1 5:0.913600668211
2 3:0.20134475739
2 4:0.06382355041
2 5:0.880442568739
3 4:0.217244924426
3 5:0.861838397236
4 5:0.863698086075
</hsp>