sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3SLM-B33-B34
X
>3SKI-B33-B34
X
>3KNH-A1288-A1289
X
>3SKW-B32-B33
X
>3OGE-A1297-A1298
X
>3OGY-A1297-A1298
X
>3OI0-A1297-A1298
X
>3OHY-A1297-A1298
X
>3OHC-A1297-A1298
X
>3OHD-A1297-A1298
X
>2J02-A1297-A1298
X
>2J00-A1297-A1298
X
</seq>
<hsp>
0 1:0.956442723279
0 2:0.722920162678
0 3:1.0
0 4:0.693523873256
0 5:0.692984810821
0 6:0.75615429644
0 7:0.756689618703
0 8:0.834376088806
0 9:0.835521820982
0 10:0.830346640002
0 11:0.824970484967
1 2:0.440200458304
1 3:0.223741230678
1 4:0.514571700805
1 5:0.508541958279
1 6:0.69810812157
1 7:0.692724965727
1 8:0.51494344293
1 9:0.511311440763
1 10:0.417838884451
1 11:0.424294720691
2 3:0.569720937241
2 4:0.331369933112
2 5:0.32695461612
2 6:0.480177766996
2 7:0.477233102225
2 8:0.483584912011
2 9:0.48480421369
2 10:0.459295811418
2 11:0.462444744896
3 4:0.572517014632
3 5:0.565135164069
3 6:0.707935275888
3 7:0.702836729254
3 8:0.488289687668
3 9:0.482222049424
3 10:0.346033333193
3 11:0.349371259549
4 5:0.0152580980619
4 6:0.240911529809
4 7:0.235605133525
4 8:0.259234741949
4 9:0.263690913157
4 10:0.378177793645
4 11:0.38258162995
5 6:0.241625792042
5 7:0.23679998109
5 8:0.256540199877
5 9:0.260278947012
5 10:0.372012289945
5 11:0.376227984696
6 7:0.013999823766
6 8:0.269959036709
6 9:0.275197682634
6 10:0.433634467789
6 11:0.43487840986
7 8:0.263916299101
7 9:0.269685479382
7 10:0.428074484519
7 11:0.429510687279
8 9:0.0142405598998
8 10:0.261608425786
8 11:0.266343027955
9 10:0.258401058508
9 11:0.262836746764
10 11:0.020700418382
</hsp>