sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3SLM-A33-A34
X
>3KNH-A897-A1311
X
>2VQE-A906-A1320
X
>3F1E-A906-A1320
X
>3F1G-A906-A1320
X
>2VQF-A906-A1320
X
>2UUA-A906-A1320
X
>2UUB-A906-A1320
X
>2UXC-A906-A1320
X
>1XMQ-A906-A1315
X
>1N32-A906-A1320
X
</seq>
<hsp>
0 1:0.921183594196
0 2:0.977248115384
0 3:0.684950854945
0 4:0.688079129984
0 5:0.872799376114
0 6:0.850190817386
0 7:0.920120254303
0 8:0.95699345704
0 9:0.945391656509
0 10:0.999999397652
1 2:0.37746494996
1 3:0.433698621403
1 4:0.431195246047
1 5:0.459341299162
1 6:0.319880368274
1 7:0.368499050915
1 8:0.385168335611
1 9:0.411978169794
1 10:0.39157469057
2 3:0.364152535293
2 4:0.364751660834
2 5:0.296171396242
2 6:0.26230966336
2 7:0.200305839212
2 8:0.186285583198
2 9:0.200118285804
2 10:0.252395886802
3 4:0.0227638795496
3 5:0.229757726172
3 6:0.30346302743
3 7:0.297304126638
3 8:0.401746479499
3 9:0.377792437861
3 10:0.476825745507
4 5:0.221875905996
4 6:0.294272164179
4 7:0.287697327781
4 8:0.395045266839
4 9:0.369535633573
4 10:0.469499382616
5 6:0.235555914153
5 7:0.207324068394
5 8:0.319059296483
5 9:0.286165475261
5 10:0.41280043562
6 7:0.181381652419
6 8:0.189125695433
6 9:0.193373102775
6 10:0.264763403422
7 8:0.182417847742
7 9:0.133806123366
7 10:0.239370473272
8 9:0.118945753132
8 10:0.11961809055
9 10:0.158986226331
</hsp>