sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1550-A1551
X
>1N32-A1297-A1298
X
>1XMQ-A1292-A1293
X
>2UUA-A1297-A1298
X
>2UXC-A1297-A1298
X
>2VQF-A1297-A1298
X
>3F1E-A1297-A1298
X
>3F1G-A1297-A1298
X
>2UUB-A1297-A1298
X
>2VQE-A1297-A1298
X
>1FJG-A1297-A1298
X
</seq>
<hsp>
0 1:0.805244664174
0 2:0.887996188038
0 3:0.491214106688
0 4:0.637958977716
0 5:0.767769142106
0 6:0.984168371114
0 7:0.999996270963
0 8:0.518436390914
0 9:0.661025893342
0 10:0.945134098184
1 2:0.266142302774
1 3:0.464098501694
1 4:0.315328664461
1 5:0.348144764746
1 6:0.442174498577
1 7:0.445949459154
1 8:0.46694155211
1 9:0.480435429979
1 10:0.458912515804
2 3:0.518612843653
2 4:0.354846598662
2 5:0.221572573886
2 6:0.261164773216
2 7:0.273772871322
2 8:0.419868393782
2 9:0.363437838694
2 10:0.251478516268
3 4:0.356926796204
3 5:0.427317868146
3 6:0.664601630163
3 7:0.670935621517
3 8:0.312040511148
3 9:0.404128016729
3 10:0.583091344921
4 5:0.366719477157
4 6:0.55106310476
4 7:0.564120658163
4 8:0.32332678693
4 9:0.279649903296
4 10:0.441333131253
5 6:0.305771684781
5 7:0.317420535274
5 8:0.300197566968
5 9:0.279235231222
5 10:0.29303455553
6 7:0.0452944003624
6 8:0.501817627676
6 9:0.479139129556
6 10:0.276860309988
7 8:0.522755325899
7 9:0.49889647105
7 10:0.272590080765
8 9:0.215362618878
8 10:0.462289301943
9 10:0.350090270339
</hsp>